Enzymes in Synthetic Biology

Nigel Scrutton (The School of Chemistry at the University of Manchester, UK)

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English

Academic Press Inc
01 September 2018

Biophysics; Biochemistry; Enzymology; Molecular biology

Series: Methods in Enzymology

Volume 608 of the series Methods in Enzymology covers key aspects of enzyme discovery, engineering tools and platforms, and examples of applications in the enzymology of synthetic biology.

Volume editor: Nigel Scrutton (The School of Chemistry at the University of Manchester UK)
Imprint: Academic Press Inc
Country of Publication: United States
Dimensions: Height: 229mm, Width: 152mm,
Weight: 970g
ISBN: 9780128151488
ISBN 10: 012815148X
Series: Methods in Enzymology
Pages: 457
Publication Date: 01 September 2018
Audience: Professional and scholarly , Undergraduate
Format: Hardback
Publisher's Status: Active

Section I: Enzyme Discovery 1. Enzyme Discovery: Enzyme Selection and Pathway Design P. Carbonell, Mathilde Koch, Thomas Duigou and J.L. Faulon Section II: Enzyme Engineering Tools and Platforms 2. Cell-Free Synthetic Biology for Pathway Prototyping Ashty S. Karim and Michael C. Jewett 3. Fast and Flexible Synthesis of Combinatorial Libraries for Directed Evolution Joanna C. Sadler, Lucy Green, Neil Swainston, Douglas B. Kell and Andrew Currin Section III: Enzyme Families: Parts and Platforms for Chemical Diversity 4. Sesquiterpene Synthase Catalyzed Conversion of a Farnesyl Diphosphate Analogue to a Non-natural Terpenoid Ether Florence Huynh David J. Miller and Rudolf K. Allemann 5. In Vivo Platforms for Terpenoid Overproduction and the Generation of Chemical Diversity Guangkai Bian, Tian Ma and Tiangang Liu 6. Imine Reductases, Reductive Aminases, and Amine Oxidases for the Synthesis of Chiral Amines: Discovery, Characterization, and Synthetic Applications S.C. Cosgrove, A. Brzezniak, S.P. France, J.I. Ramsden, J. Mangas-Sanchez, S.L. Montgomery, R.S. Heath and N.J. Turner 7. Experimental Protocols for Generating Focused Mutant Libraries and Screening for Thermostable Proteins M.J.L.J. Fürst, C. Martin, N. Loncar and M.W. Fraaije 8. Characterization of Cytochrome P450 Enzymes and their Applications in Synthetic Biology L. N. Jeffreys, H. M. Girvan, K. J. McLean and A. W. Munro Section IV: Genome Engineering for Enzyme Pathways 9. Metabolic Engineering of Saccharomyces cerevisiae Using a Trifunctional CRISPR/Cas System for Simultaneous Gene Activation, Interference, and Deletion Carl Schultz, Jiazhang Lian and Huimin Zhao 10. YeastFab: High Throughput Genetic Parts Construction, Measurement and Pathway Engineering in Yeast Eva Garcia-Ruiz, Jamie Auxillos, Tianyi Li, Junbiao Dai and Yizhi Cai Section V: Bioengineered Strains with Designed Enzyme Pathways 11. Halomonas and Pathway Engineering for Bioplastics Production Jiang Xiao-Ran, Yin Jin, Chen Xiangbin and Chen Guo-Qiang 12. An Engineering Approach for Rewiring Microbial Metabolism Sebastian Wenk, Oren Yishai, Steffen N. Lindner and Arren Bar-Even 13. Multifragment DNA Assembly of Biochemical Pathways via Automated Ligase Cycling Reaction C.J. Robinson, M.S. Dunstan, N. Swainston, J. Titchmarsh, E. Takano, N.S. Scrutton and A.J. Jervis 14. Commodity Chemicals From Engineered Multimodular Type I Polyketide Synthases Satoshi Yuzawa, Amin Zargar, Bo Pang, Leonard Katz and Jay D. Keasling 15. Modular Pathway Rewiring of Yeast for Amino Acid Production Quanli Liu, Tao Yu, Kate Campbell, Jens Nielsen and Yun Chen

Nigel Scrutton is Director of the Manchester Institute of Biotechnology (MIB), and Professor of Enzymology and Biophysical Chemistry in the School of Chemistry at the University of Manchester. He has made major contributions to the study of enzyme catalysis, the mechanisms and structures of enzymes and the photochemistry of photoreceptor proteins. His group has pioneered investigations that have led to both deep understanding and recognition of the general importance of quantum tunnelling and protein dynamics in enzyme H-transfer and conformational ensemble sampling in electron transfer reactions. This has involved the development of new biophysical approaches for reaction kinetics analysis including kinetic isotope effect studies, their integration into structural and computational programmes, and extension of theory. He has also made important contributions to enzyme kinetics, coenzyme chemistry, protein engineering, directed evolution, synthetic biology, biological engineering, biocatalysis and metabolic engineering, including the first rational redesign of the coenzyme specificity of an enzyme and the discovery of new riboflavin cofactors. He is currently director of the synthetic biology research centre (SYNBIOCHEM), which specializes in the engineering of biology for chemicals and materials production.